It's funny, you mention that I use a stat like FIP over ERA and I get the argument that FIP is a flawed stat. When trying to compare two things that existed in different environments (i.e Scherzer pitching vs Hendricks), I want to normalize as much as possible. For example, this year the Cubs park was one of the best parks for pitchers in the entire league. That's an advantage that Kyle has over Scherzer in trying to figure out ERA when all things are equal.
I get that it's not something people want to do but I do want to try and normalize for park, opponent, etc. To me, Scherzer has been the better pitcher than Kyle due to his ability to induce strikeouts and pitch deep in to games with limited runs.
Scherzer
Times 7+: 19
Times 8+: 6
CG: 1
Times 7+, 2 ER or less: 17
Times 8+, 2 ER or less: 5
CG, 2 ER or less: 1
Median Game Score: 69.5
Hendricks
Times 7+: 7
Times 8+: 4
CG: 2
Times 7+, 2 ER or less: 7
Times 8+, 2 ER or less: 4
GG, 2 ER or less: 2
Median Game Score: 62
Kyle has been great this year, he's third on "my" ballot for Cy Young but I just don't believe the Cy Young is for pitchers who predominantly pitch 6 innings a start and do not often go deep in to ball games unless they've been historically good in those innings. With Kyle's case, I think he's been good but the difference in innings (Scherzer is at 30 more innings) is quite staggering when comparing the two.
Essentially you're saying the reason to give some a Cy Young is not because they have a lot of great outings; it's have they avoided the bad one. Kyle has 23 starts of 2 ER or less and Scherzer is at 21; the difference in the two is the four "poor" starts Scherzer has that Kyle doesn't (5 ER in three of them, 7 in a fourth). That to me isn't a good reason to give a Cy Young. I much rather concern myself with how good you're good is than how good your bad is.